Article
The pan-tandem repeat map highlights multiallelic variants underlying gene expression and agronomic traits in rice.
Nature communications - 24 Aug 2024
He Huiying, Leng Yue, Cao Xinglan, Zhu Yiwang, Li Xiaoxia, Yuan Qiaoling, Zhang Bin, He Wenchuang, Wei Hua, Liu Xiangpei, Xu Qiang, Guo Mingliang, Zhang Hong, Yang Longbo, Lv Yang, Wang Xianmeng, Shi Chuanlin, Zhang Zhipeng, Chen Wu, Zhang Bintao, Wang Tianyi, Yu Xiaoman, Qian Hongge, Zhang Qianqian, Dai Xiaofan, Liu Congcong, Cui Yan, Wang Yuexing, Zheng Xiaoming, Xiong Guosheng, Zhou Yongfeng, Qian Qian, Shang Lianguang
Abstract excerpt
Tandem repeats (TRs) are genomic regions that tandemly change in repeat number, which are often multiallelic. Their characteristics and contributions to gene expression and quantitative traits in rice are largely unknown. Here, we survey rice TR variations based on 231 genome assemblies and the rice pan-genome graph. We identify 227,391 multiallelic TR loci, including 54,416 TR variations that are absent from the...
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