Article
Segmentation aware probabilistic phenotyping of single-cell spatial protein expression data.
Nature communications - 4 Jan 2025
Lee Yuju, Chen Edward L Y, Chan Darren C H, Dinesh Anuroopa, Afiuni-Zadeh Somaieh, Klamann Conor, Selega Alina, Mrkonjic Miralem, Jackson Hartland W, Campbell Kieran R
Abstract excerpt
Spatial protein expression technologies can map cellular content and organization by simultaneously quantifying the expression of >40 proteins at subcellular resolution within intact tissue sections and cell lines. However, necessary image segmentation to single cells is challenging and error prone, easily confounding the interpretation of cellular phenotypes and cell clusters. To address these limitations, we...
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