Article
Deep learning-based phenotype imputation on population-scale biobank data increases genetic discoveries.
Nature genetics - 1 Dec 2023
An Ulzee, Pazokitoroudi Ali, Alvarez Marcus, Huang Lianyun, Bacanu Silviu, Schork Andrew J, Kendler Kenneth, Pajukanta Päivi, Flint Jonathan, Zaitlen Noah, Cai Na, Dahl Andy, Sankararaman Sriram
Abstract excerpt
Biobanks that collect deep phenotypic and genomic data across many individuals have emerged as a key resource in human genetics. However, phenotypes in biobanks are often missing across many individuals, limiting their utility. We propose AutoComplete, a deep learning-based imputation method to impute or 'fill-in' missing phenotypes in population-scale biobank datasets. When applied to collections of phenotypes...
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