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SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.

Bioinformatics (Oxford, England) - 3 Oct 2023

Colquhoun Rachel, Jackson Ben, O'Toole Áine, Rambaut Andrew

Abstract excerpt

SUMMARY: Scorpio provides a set of command line utilities for classifying, haplotyping, and defining constellations of mutations for an aligned set of genome sequences. It was developed to enable exploration and classification of variants of concern within the SARS-CoV-2 pandemic, but can be applied more generally to other species. AVAILABILITY AND IMPLEMENTATION: Scorpio is an open-source project distributed...

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Identifiers

PMID: 37713452
DOI: 10.1093/bioinformatics/btad575
PMCID: PMC10563142

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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