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Article

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees.

Molecular biology and evolution - 9 Dec 2021

McBroome Jakob, Thornlow Bryan, Hinrichs Angie S, Kramer Alexander, De Maio Nicola, Goldman Nick, Haussler David, Corbett-Detig Russell, Turakhia Yatish

Abstract excerpt

The vast scale of SARS-CoV-2 sequencing data has made it increasingly challenging to comprehensively analyze all available data using existing tools and file formats. To address this, we present a database of SARS-CoV-2 phylogenetic trees inferred with unrestricted public sequences, which we update daily to incorporate new sequences. Our database uses the recently proposed mutation-annotated tree (MAT) format to...

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Identifiers

PMID: 34469548
DOI: 10.1093/molbev/msab264
PMCID: PMC8662617

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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