Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

MicroGMT: A Mutation Tracker for SARS-CoV-2 and Other Microbial Genome Sequences

25 Jun 2020

Abstract excerpt

With the continued spread of SARS-CoV-2 virus around the world, researchers often need to quickly identify novel mutations in newly sequenced SARS-CoV-2 genomes for studying the molecular evolution and epidemiology of the virus. We have developed a Python package, MicroGMT, which takes either raw sequence reads or assembled genome sequences as input and compares against database sequences to identify and...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacteriophages and microbial interactions
Share to Genomics and Phylogenetic Studies
Share to SARS-CoV-2 and COVID-19 Research

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Source

Identifiers

PMID: 32670259
DOI: 10.3389/fmicb.2020.01502

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 8 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

MicroGMT: A Mutation Tracker for SARS-CoV-2 and Other Microbial Genome SequencesPMID 32670259Read ↗

The Mutational Landscape of SARS-CoV-2.Semantic proximity Read ↗

An integrated approach to determine the abundance, mutation rate and phylogeny of the SARS-CoV-2 genomeSemantic proximity Read ↗

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees.Semantic proximity Read ↗

A Computational Toolset for Rapid Identification of SARS-CoV-2, other Viruses, and Microorganisms from Sequencing DataSemantic proximity Read ↗

Fast and accurate variant identification tool for sequencing-based studies.Semantic proximity Read ↗

“Mutation blacklist” and “mutation whitelist” of SARS-CoV-2Semantic proximity Read ↗

CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysisSemantic proximity Read ↗

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.Semantic proximity Read ↗

Epi-Clock: A sensitive platform to help understand pathogenic disease outbreaks and facilitate the response to future outbreaks of concern.Semantic proximity Read ↗

CovMT: an interactive SARS-CoV-2 mutation tracker, with a focus on critical variantsSemantic proximity Read ↗

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispeciesSemantic proximity Read ↗

Viral Instant Mutation Viewer: A Tool to Speed Up the Identification and Analysis of New SARS-CoV-2 Emerging Variants and Beyond.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.