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Article

CodingDiv: analyzing SNP-level microdiversity to discriminate between coding and noncoding regions in viral genomes.

Bioinformatics (Oxford, England) - 1 Jul 2023

Olo Ndela Eric, Enault François

Abstract excerpt

SUMMARY: Viral genes, that are frequently small genes and/or with large overlaps, are still difficult to predict accurately. To help predict all genes in viral genomes, we provide CodingDiv that detects SNP-level microdiversity of all potential coding regions, using metagenomic reads and/or similar sequences from external databases. Protein coding regions can then be identified as the ones containing more...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 37449883
DOI: 10.1093/bioinformatics/btad408
PMCID: PMC10356776

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