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Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15+, 34.

International journal of food microbiology - 16 May 2021

Xu Feng, Ge Chongtao, Li Shaoting, Tang Silin, Wu Xingwen, Luo Hao, Deng Xiangyu, Zhang Guangtao, Stevenson Abigail, Baker Robert C

Abstract excerpt

Our previous study demonstrated that whole genome sequencing (WGS) data generated by Oxford Nanopore Technologies (ONT) can be used for rapid and accurate prediction of selected Salmonella serotypes. However, one limitation is that established methods for WGS-based serotype prediction, utilizing data from either ONT or Illumina, cannot differentiate certain serotypes and serotype variants with the same or closely...

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PMID: 33774575
DOI: 10.1016/j.ijfoodmicro.2021.109167

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