Article
FACETS: Fraction and Allele-Specific Copy Number Estimates from Tumor Sequencing.
Methods in molecular biology (Clifton, N.J.) - 1 Jan 2022
Arora Arshi, Shen Ronglai, Seshan Venkatraman E
Abstract excerpt
Clinical sequencing studies routinely involve molecular profiling of patients for mutations and copy number alterations. However, detection of "actionable" aberrations to guide treatment decisions require accurate, tumor purity-, ploidy-, and clonal heterogeneity-adjusted integer copy number calls. In this chapter, we describe the FACETS algorithm, an Allele-Specific Copy Number (ASCN) analysis tool with a broad...
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