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Article

Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.

Bioinformatics (Oxford, England) - 12 Jan 2022

Marini Simone, Mavian Carla, Riva Alberto, Prosperi Mattia, Salemi Marco, Rife Magalis Brittany

Abstract excerpt

SUMMARY: TARDiS is a novel phylogenetic tool for optimal genetic subsampling. It optimizes both genetic diversity and temporal distribution through a genetic algorithm. AVAILABILITY AND IMPLEMENTATION: TARDiS, along with example datasets and a user manual, is available at https://github.com/smarini/tardis-phylogenetics.

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PMID: 34672334
DOI: 10.1093/bioinformatics/btab725
PMCID: PMC8756195

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