Article
ResFinder 4.0 for predictions of phenotypes from genotypes.
The Journal of antimicrobial chemotherapy - 1 Dec 2020
Bortolaia Valeria, Kaas Rolf S, Ruppe Etienne, Roberts Marilyn C, Schwarz Stefan, Cattoir Vincent, Philippon Alain, Allesoe Rosa L, Rebelo Ana Rita, Florensa Alfred Ferrer, Fagelhauer Linda, Chakraborty Trinad, Neumann Bernd, Werner Guido, Bender Jennifer K, Stingl Kerstin, Nguyen Minh, Coppens Jasmine, Xavier Basil Britto, Malhotra-Kumar Surbhi, Westh Henrik, Pinholt Mette, Anjum Muna F, Duggett Nicholas A, Kempf Isabelle, Nykäsenoja Suvi, Olkkola Satu, Wieczorek Kinga, Amaro Ana, Clemente Lurdes, Mossong Joël, Losch Serge, Ragimbeau Catherine, Lund Ole, Aarestrup Frank M
Abstract excerpt
OBJECTIVES: WGS-based antimicrobial susceptibility testing (AST) is as reliable as phenotypic AST for several antimicrobial/bacterial species combinations. However, routine use of WGS-based AST is hindered by the need for bioinformatics skills and knowledge of antimicrobial resistance (AMR) determinants to operate the vast majority of tools developed to date. By leveraging on ResFinder and PointFinder, two freely...
Read the complete abstract on PubMedTopics
Share this publication in a Topic to start or enrich a Post.