Article

AMRgen: an R package for antimicrobial resistance genotype-phenotype analysis

2026-05-04

Abstract excerpt

Microbial whole-genome sequence data is now generated at scale, including to support antimicrobial resistance (AMR) surveillance and understand resistance mechanisms, yet analytical infrastructure for systematically linking AMR genotypes to measured phenotypes remains fragmented. Here we present AMRgen , an R package to support systematic AMR genotype-phenotype analysis. AMRgen imports and harmonises genotypic...

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Literature Corpus work: 4f0dcaab-bea3-593b-9aeb-72d3fa2e42a4
DOI: 10.64898/2026.05.01.722195

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