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Article

A comprehensive AMR genotype-phenotype database (CABBAGE).

Nucleic acids research - 24 Aug 2026

Dickens Emily, Derelle Romain, Beardmore Robert, Suresh Anita, Uplekar Swapna, Azov Andrey G, Gurbich Tatiana A, Houdaigui Bilal El, Keatley Jon, Ochkalova Sofiia, Koci Orges, Rahman Nadim M, Shivalikanjli Anu, Winterbottom Andrea, Yordanova Galabina, Parkinson Helen, Yates Andrew D, Finn Robert D, Lees John A, Chindelevitch Leonid

Abstract excerpt

Addressing the growing threat of antimicrobial resistance (AMR) requires the development of large-scale resources that link bacterial genomic data with phenotypic AMR profiles. Such datasets are essential for advancing genotype-based predictions of resistance to uncover novel resistance mechanisms, as well as identifying and tracking global trends. Here, we describe the development of the "Comprehensive...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 42635122
DOI: 10.1093/nar/gkag780
PMCID: PMC13501133

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