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Article

SPAligner: alignment of long diverged molecular sequences to assembly graphs.

BMC bioinformatics - 24 Jul 2020

Dvorkina Tatiana, Antipov Dmitry, Korobeynikov Anton, Nurk Sergey

Abstract excerpt

BACKGROUND: Graph-based representation of genome assemblies has been recently used in different contexts - from improved reconstruction of plasmid sequences and refined analysis of metagenomic data to read error correction and reference-free haplotype reconstruction. While many of these applications heavily utilize the alignment of long nucleotide sequences to assembly graphs, first general-purpose software tools...

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Identifiers

PMID: 32703258
DOI: 10.1186/s12859-020-03590-7
PMCID: PMC7379835

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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