RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis

Abstract excerpt

<h4>Background</h4> Next-generation sequencing for assaying microbial communities has become a standard technique in recent years. However, the initial investment required into in-silico analytics is still quite significant, especially for facilities not focused on bioinformatics. With the rapid decline in costs and growing adoption of sequencing-based methods in a number of fields, validated, fully automated, re...

Topics

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• Algorithms
• Bacteria
• Computational Biology
• High-Throughput Nucleotide Sequencing
• Metagenome
• Microbiota
• RNA, Ribosomal, 16S
• Workflow

Identifiers and source

Literature Corpus work

a936faa2-d664-5199-8dd0-14ac9a26c83f

DOI

10.1101/2024.08.06.606757