Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Sequence Compression Benchmark (SCB) database-A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences.

GigaScience - 1 Jul 2020

Kryukov Kirill, Ueda Mahoko Takahashi, Nakagawa So, Imanishi Tadashi

Abstract excerpt

BACKGROUND: Nearly all molecular sequence databases currently use gzip for data compression. Ongoing rapid accumulation of stored data calls for a more efficient compression tool. Although numerous compressors exist, both specialized and general-purpose, choosing one of them was difficult because no comprehensive analysis of their comparative advantages for sequence compression was available. FINDINGS: We...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Computational Biology

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Databases, Nucleic Acid

Share to Genomics

Share to Models, Theoretical

Share to Neoplasms

Share to Sequence Analysis, DNA

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 32627830
DOI: 10.1093/gigascience/giaa072
PMCID: PMC7336184

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Sequence Compression Benchmark (SCB) database-A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences.PMID 32627830Read ↗

NanoSpring: reference-free lossless compression of nanopore sequencing reads using an approximate assembly approachSemantic proximity Read ↗

A pipeline for constructing reference genomes for large cohort-specific metagenome compressionSemantic proximity Read ↗

GeneSqueeze: A Novel Lossless, Reference-Free Compression Algorithm for FASTQ/A FilesSemantic proximity Read ↗

CRAM compression: practical across-technologies considerations for large-scale sequencing projectsSemantic proximity Read ↗

Compressing genomic sequence fragments using SlimGene.Semantic proximity Read ↗

FaStore – a space-saving solution for raw sequencing dataSemantic proximity Read ↗

GSC: efficient lossless compression of VCF files with fast query.Semantic proximity Read ↗

QualComp: a new lossy compressor for quality scores based on rate distortion theory.Semantic proximity Read ↗

Evaluation of sequencing reads at scale using rdevalSemantic proximity Read ↗

Lossy Compression of Quality Values in Sequencing Data.Semantic proximity Read ↗

Lossy compression of quality scores in genomic data.Semantic proximity Read ↗

Comparative evaluation of computational methods for reconstruction of human viral genomesSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.