Article
Full likelihood inference from the site frequency spectrum based on the optimal tree resolution.
Theoretical population biology - 1 Dec 2018
Sainudiin Raazesh, Véber Amandine
Abstract excerpt
We develop a novel importance sampler to compute the full likelihood function of a demographic or structural scenario given the site frequency spectrum (SFS) at a locus free of intra-locus recombination. This sampler, instead of representing the hidden genealogy of a sample of individuals by a labelled binary tree, uses the minimal level of information about such a tree that is needed for the likelihood of the...
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