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chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.

Microbial genomics - 1 Mar 2018

Silva Mickael, Machado Miguel P, Silva Diogo N, Rossi Mirko, Moran-Gilad Jacob, Santos Sergio, Ramirez Mario, Carriço João André

Abstract excerpt

Gene-by-gene approaches are becoming increasingly popular in bacterial genomic epidemiology and outbreak detection. However, there is a lack of open-source scalable software for schema definition and allele calling for these methodologies. The chewBBACA suite was designed to assist users in the creation and evaluation of novel whole-genome or core-genome gene-by-gene typing schemas and subsequent allele calling...

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PMID: 29543149
DOI: 10.1099/mgen.0.000166
PMCID: PMC5885018

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