Article
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.
PloS one - 1 Jan 2018
Saltykova Assia, Wuyts Véronique, Mattheus Wesley, Bertrand Sophie, Roosens Nancy H C, Marchal Kathleen, De Keersmaecker Sigrid C J
Abstract excerpt
Whole genome sequencing represents a promising new technology for subtyping of bacterial pathogens. Besides the technological advances which have pushed the approach forward, the last years have been marked by considerable evolution of the whole genome sequencing data analysis methods. Prior to application of the technology as a routine epidemiological typing tool, however, reliable and efficient data analysis...
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