Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data.

BMC genomics - 1 Jan 2012

Leekitcharoenphon Pimlapas, Kaas Rolf S, Thomsen Martin Christen Frølund, Friis Carsten, Rasmussen Simon, Aarestrup Frank M

Abstract excerpt

BACKGROUND: The advances and decreasing economical cost of whole genome sequencing (WGS), will soon make this technology available for routine infectious disease epidemiology. In epidemiological studies, outbreak isolates have very little diversity and require extensive genomic analysis to differentiate and classify isolates. One of the successfully and broadly used methods is analysis of single nucletide...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacteria
Share to Genome, Bacterial

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Internet

Share to Mycobacterium tuberculosis

Share to Salmonella typhimurium

Share to Staphylococcus aureus

Share to User-Computer Interface

Share to Vibrio cholerae

Source

Open in PubMed Open full text

Identifiers

PMID: 23281601
DOI: 10.1186/1471-2164-13-S7-S6
PMCID: PMC3521233

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data.PMID 23281601Read ↗

vSNP: a SNP pipeline for the generation of transparent SNP matrices and phylogenetic trees from whole genome sequencing data sets.Semantic proximity Read ↗

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments.Semantic proximity Read ↗

From raw reads to trees: Whole genome SNP phylogenetics across the tree of lifeSemantic proximity Read ↗

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.Semantic proximity Read ↗

Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.Semantic proximity Read ↗

snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing.Semantic proximity Read ↗

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP.Semantic proximity Read ↗

Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel.Semantic proximity Read ↗

Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes.Semantic proximity Read ↗

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.Semantic proximity Read ↗

When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes.Semantic proximity Read ↗

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.