Back to search

Article

Multi-country and intersectoral assessment of cluster congruence between different bioinformatics pipelines for genomics surveillance of foodborne bacterial pathogens

2024-07-25

Abstract excerpt

Food and waterborne disease (FWD) surveillance requires Whole-Genome Sequencing (WGS)-based systems following a One Health approach. However, different laboratories employ different WGS pipelines in their routine surveillance activities, casting doubt on the comparability of their results and hindering optimal communication at intersectoral and international levels. Through a collaborative effort involving eleven...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work
4998ade7-201f-54e2-b615-f856370f0d04
DOI
10.1101/2024.07.24.24310933
Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest
Interactive article relationship graphSelect a related publication card to move it into the centre and load its closest explainable connections. Solid lines are source-backed structured connections. Dashed lines are semantic discovery signals and are not scientific evidence.
Multi-country and intersectoral assessment of cluster congruence between different bioinformatics pipelines for genomics surveillance of foodborne bacterial pathogensDOI 10.1101/2024.07.24.24310933
Translatability of WGS typing results can simplify data exchange for surveillance and control of Listeria monocytogenes.Semantic proximity
Concordance of SNP- and allele-based typing workflows in the context of a large-scale international Salmonella Enteritidis outbreak investigation.Semantic proximity
Integrated Whole-Genome Sequencing Infrastructure for Outbreak Detection and Source Tracing of Salmonella enterica Serotype Enteritidis.Semantic proximity
Whole genome sequencing as a typing tool for foodborne pathogens like Listeria monocytogenes – The way towards global harmonisation and data exchangeSemantic proximity
Genomic paradigms for food-borne enteric pathogen analysis at the USFDA: case studies highlighting method utility, integration and resolution.Semantic proximity
Harmonization of whole-genome sequencing for outbreak surveillance of Enterobacteriaceae and Enterococci.Semantic proximity
Whole-Genome Sequencing of Recent Listeria monocytogenes Isolates from Germany Reveals Population Structure and Disease Clusters.Semantic proximity
Compatibility of whole-genome sequencing data from Illumina and Ion Torrent technologies in genome comparison analysis of Listeria monocytogenes.Semantic proximity
Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes.Semantic proximity
Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak.Semantic proximity
A one health approach for enhancing the integration of<i>Salmonella enterica</i>surveillance in ColombiaSemantic proximity
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.Semantic proximity
Select a neighboring publication to make it the new centre.