Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SNP2TFBS - a database of regulatory SNPs affecting predicted transcription factor binding site affinity.

Nucleic acids research - 4 Jan 2017

Kumar Sunil, Ambrosini Giovanna, Bucher Philipp

Abstract excerpt

SNP2TFBS is a computational resource intended to support researchers investigating the molecular mechanisms underlying regulatory variation in the human genome. The database essentially consists of a collection of text files providing specific annotations for human single nucleotide polymorphisms (SNPs), namely whether they are predicted to abolish, create or change the affinity of one or several transcription...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Binding Sites
Share to Computational Biology

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Databases, Nucleic Acid

Share to Genome, Human

Share to Genomics

Share to Protein Binding

Share to Web Browser

Source

Open in PubMed Open full text

Identifiers

PMID: 27899579
DOI: 10.1093/nar/gkw1064
PMCID: PMC5210548

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SNP2TFBS - a database of regulatory SNPs affecting predicted transcription factor binding site affinity.PMID 27899579Read ↗

Regulatory SNPs: Altered Transcription Factor Binding Sites Implicated in Complex Traits and Diseases.Semantic proximity Read ↗

SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions.Semantic proximity Read ↗

Predicting the effects of SNPs on transcription factor binding affinitySemantic proximity Read ↗

rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations.Semantic proximity Read ↗

atSNP: transcription factor binding affinity testing for regulatory SNP detection.Semantic proximity Read ↗

Evaluating the impact of single nucleotide variants on transcription factor binding.Semantic proximity Read ↗

The distribution of SNPs in human gene regulatory regions.Semantic proximity Read ↗

F-SNP: computationally predicted functional SNPs for disease association studies.Semantic proximity Read ↗

Large-scale computational identification of regulatory SNPs with rSNP-MAPPER.Semantic proximity Read ↗

FABIAN-variant: predicting the effects of DNA variants on transcription factor binding.Semantic proximity Read ↗

FABIAN-variant 2026: improved prediction of the effects of DNA variants on transcription factor binding.Semantic proximity Read ↗

BayesPI-BAR: a new biophysical model for characterization of regulatory sequence variations.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.