Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.

Nucleic acids research - 25 Jan 2017

Zolfo Moreno, Tett Adrian, Jousson Olivier, Donati Claudio, Segata Nicola

Abstract excerpt

Metagenomic characterization of microbial communities has the potential to become a tool to identify pathogens in human samples. However, software tools able to extract strain-level typing information from metagenomic data are needed. Low-throughput molecular typing schema such as Multilocus Sequence Typing (MLST) are still widely used and provide a wealth of strain-level information that is currently not...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacteria
Share to Gastrointestinal Microbiome
Share to Genome, Bacterial

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Metagenome

Share to Metagenomics

Share to Multilocus Sequence Typing

Share to Software

Share to Web Browser

Source

Open in PubMed Open full text

Identifiers

PMID: 27651451
DOI: 10.1093/nar/gkw837
PMCID: PMC5314789

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.PMID 27651451Read ↗

MetaStrainer: accurate reconstruction of bacterial strain genotypes from short-read metagenomic samples.Semantic proximity Read ↗

StrainXpress: strain aware metagenome assembly from short readsSemantic proximity Read ↗

StrainXpress: strain aware metagenome assembly from short readsSemantic proximity Read ↗

High-throughput multilocus sequence typing: bringing molecular typing to the next level.Semantic proximity Read ↗

STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data.Semantic proximity Read ↗

StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communitiesSemantic proximity Read ↗

Strain profiling and epidemiology of bacterial species from metagenomic sequencing.Semantic proximity Read ↗

Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework.Semantic proximity Read ↗

Comparison Of Multi-locus Sequence Typing software For next generation sequencing dataSemantic proximity Read ↗

The multilocus sequence typing network: mlst.net.Semantic proximity Read ↗

SRST2: Rapid genomic surveillance for public health and hospital microbiology labsSemantic proximity Read ↗

Core Genome Multi-locus Sequence Typing Analyses of Leptospira spp. Using the Bacterial Isolate Genome Sequence Database.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.