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Article

ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.

Nucleic acids research - 9 Jan 2017

Li Guipeng, Chen Yang, Snyder Michael P, Zhang Michael Q

Abstract excerpt

ChIA-PET2 is a versatile and flexible pipeline for analyzing different types of ChIA-PET data from raw sequencing reads to chromatin loops. ChIA-PET2 integrates all steps required for ChIA-PET data analysis, including linker trimming, read alignment, duplicate removal, peak calling and chromatin loop calling. It supports different kinds of ChIA-PET data generated from different ChIA-PET protocols and also...

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Identifiers

PMID: 27625391
DOI: 10.1093/nar/gkw809
PMCID: PMC5224499

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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