Article
The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data.
Nucleic acids research - 16 Dec 2014
Tang Xiaojia, Baheti Saurabh, Shameer Khader, Thompson Kevin J, Wills Quin, Niu Nifang, Holcomb Ilona N, Boutet Stephane C, Ramakrishnan Ramesh, Kachergus Jennifer M, Kocher Jean-Pierre A, Weinshilboum Richard M, Wang Liewei, Thompson E Aubrey, Kalari Krishna R
Abstract excerpt
Rapid development of next generation sequencing technology has enabled the identification of genomic alterations from short sequencing reads. There are a number of software pipelines available for calling single nucleotide variants from genomic DNA but, no comprehensive pipelines to identify, annotate and prioritize expressed SNVs (eSNVs) from non-directional paired-end RNA-Seq data. We have developed the...
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