Article
SNPQC--an R pipeline for quality control of Illumina SNP genotyping array data.
Animal genetics - 1 Oct 2014
Gondro Cedric, Porto-Neto Laercio R, Lee Seung Hwan
Abstract excerpt
In genome-wide association studies, quality control (QC) of genotypes is important to avoid spurious results. It is also important to maintain long-term data integrity, particularly in settings with ongoing genotyping (e.g. estimation of genomic breeding values). Here we discuss SNPQc, a fully automated pipeline to perform QC analyses of Illumina SNP array data. It applies a wide range of common quality metrics...
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