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Article

Quality control for genome-wide association studies.

Methods in molecular biology (Clifton, N.J.) - 1 Jan 2013

Gondro Cedric, Lee Seung Hwan, Lee Hak Kyo, Porto-Neto Laercio R

Abstract excerpt

This chapter overviews the quality control (QC) issues for SNP-based genotyping methods used in genome-wide association studies. The main metrics for evaluating the quality of the genotypes are discussed followed by a worked out example of QC pipeline starting with raw data and finishing with a fully filtered dataset ready for downstream analysis. The emphasis is on automation of data storage, filtering, and...

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PMID: 23756889
DOI: 10.1007/978-1-62703-447-0_5

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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