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Quality Control of Common and Rare Variants.

Methods in molecular biology (Clifton, N.J.) - 1 Jan 2018

Panoutsopoulou Kalliope, Walter Klaudia

Abstract excerpt

Thorough data quality control (QC) is a key step to the success of high-throughput genotyping approaches. Following extensive research several criteria and thresholds have been established for data QC at the sample and variant level. Sample QC is aimed at the identification and removal (when appropriate) of individuals with (1) low call rate, (2) discrepant sex or other identity-related information, (3) excess...

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PMID: 29876889
DOI: 10.1007/978-1-4939-7868-7_3

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