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Article

Differential codon adaptation between dsDNA and ssDNA phages in Escherichia coli.

Molecular biology and evolution - 1 Jun 2014

Chithambaram Shivapriya, Prabhakaran Ramanandan, Xia Xuhua

Abstract excerpt

Because phages use their host translation machinery, their codon usage should evolve toward that of highly expressed host genes. We used two indices to measure codon adaptation of phages to their host, rRSCU (the correlation in relative synonymous codon usage [RSCU] between phages and their host) and Codon Adaptation Index (CAI) computed with highly expressed host genes as the reference set (because phage...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 24586046
DOI: 10.1093/molbev/msu087
PMCID: PMC4032129

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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