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Article

Expression analysis of Arabidopsis XH/XS-domain proteins indicates overlapping and distinct functions for members of this gene family.

Journal of experimental botany - 1 Mar 2014

Butt Haroon, Graner Sonja, Luschnig Christian

Abstract excerpt

RNA-directed DNA methylation (RdDM) is essential for de novo DNA methylation in higher plants, and recent reports established novel elements of this silencing pathway in the model organism Arabidopsis thaliana. Involved in de novo DNA methylation 2 (IDN2) and the closely related factor of DNA methylation (FDM) are members of a plant-specific family of dsRNA-binding proteins characterized by conserved XH/XS...

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Identifiers

PMID: 24574485
DOI: 10.1093/jxb/ert480
PMCID: PMC3935573

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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Expression analysis of Arabidopsis XH/XS-domain proteins indicates overlapping and distinct functions for members of this gene family.PMID 24574485Read ↗

A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.Semantic proximity Read ↗

IDN2 has a role downstream of siRNA formation in RNA-directed DNA methylation.Semantic proximity Read ↗

The DNA- and RNA-binding protein FACTOR of DNA METHYLATION 1 requires XH domain-mediated complex formation for its function in RNA-directed DNA methylation.Semantic proximity Read ↗

FDDM1 and FDDM2, Two SGS3-like Proteins, Function as a Complex to Affect DNA Methylation in Arabidopsis.Semantic proximity Read ↗

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.Semantic proximity Read ↗

Identification of genes required for de novo DNA methylation in Arabidopsis.Semantic proximity Read ↗

INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis.Semantic proximity Read ↗

SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV.Semantic proximity Read ↗

SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation.Semantic proximity Read ↗

Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.Semantic proximity Read ↗

ATX3, ATX4, and ATX5 Encode Putative H3K4 Methyltransferases and Are Critical for Plant Development.Semantic proximity Read ↗

Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana.Semantic proximity Read ↗

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