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Article

SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.

Nature - 6 Mar 2014

Johnson Lianna M, Du Jiamu, Hale Christopher J, Bischof Sylvain, Feng Suhua, Chodavarapu Ramakrishna K, Zhong Xuehua, Marson Giuseppe, Pellegrini Matteo, Segal David J, Patel Dinshaw J, Jacobsen Steven E

Abstract excerpt

RNA-directed DNA methylation in Arabidopsis thaliana depends on the upstream synthesis of 24-nucleotide small interfering RNAs (siRNAs) by RNA POLYMERASE IV (Pol IV) and downstream synthesis of non-coding transcripts by Pol V. Pol V transcripts are thought to interact with siRNAs which then recru...

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Identifiers

PMID: 24463519
DOI: 10.1038/nature12931
PMCID: PMC3963826

Genes

SET

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-24463519-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

Related research

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SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.PMID 24463519Read ↗

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.Semantic proximity Read ↗

A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo.Semantic proximity Read ↗

Arabidopsis VIM proteins regulate epigenetic silencing by modulating DNA methylation and histone modification in cooperation with MET1.Semantic proximity Read ↗

Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana.Semantic proximity Read ↗

SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV.Semantic proximity Read ↗

Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.Semantic proximity Read ↗

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome.Semantic proximity Read ↗

Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.Semantic proximity Read ↗

A conserved Pol II elongator SPT6L mediates Pol V transcription to regulate RNA-directed DNA methylation in Arabidopsis.Semantic proximity Read ↗

A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development.Semantic proximity Read ↗

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.Semantic proximity Read ↗

SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation.Semantic proximity Read ↗

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