Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Optimizing SNP microarray probe design for high accuracy microbial genotyping.

Journal of microbiological methods - 1 Sept 2013

Gardner Shea N, Thissen James B, McLoughlin Kevin S, Slezak Tom, Jaing Crystal J

Abstract excerpt

Microarrays to characterize single nucleotide polymorphisms (SNPs) provide a cost-effective and rapid method (under 24h) to genotype microbes as an alternative to sequencing. We developed a pipeline for SNP discovery and microarray design that scales to 100's of microbial genomes. Here we tested various SNP probe design strategies against 8 sequenced isolates of Bacillus anthracis to compare sequence and...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacillus anthracis
Share to DNA, Bacterial
Share to DNA Probes

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genotyping Techniques

Share to Models, Genetic

Share to Molecular Typing

Share to Oligonucleotide Array Sequence Analysis

Share to Sequence Analysis, DNA

Source

Identifiers

PMID: 23871857
DOI: 10.1016/j.mimet.2013.07.006

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Optimizing SNP microarray probe design for high accuracy microbial genotyping.PMID 23871857Read ↗

Genomic diversity affects the accuracy of bacterial SNP calling pipelinesSemantic proximity Read ↗

A multiplex bead-based suspension array assay for interrogation of phylogenetically informative single nucleotide polymorphisms for Bacillus anthracis.Semantic proximity Read ↗

Rapid SNP Detection and Genotyping of Bacterial Pathogens by Pyrosequencing.Semantic proximity Read ↗

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines.Semantic proximity Read ↗

A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity.Semantic proximity Read ↗

Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis.Semantic proximity Read ↗

A genome-wide scalable SNP genotyping assay using microarray technology.Semantic proximity Read ↗

Rapid Identification of Bacillus anthracis In Silico and On-Site Using Novel Single-Nucleotide Polymorphisms.Semantic proximity Read ↗

Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects.Semantic proximity Read ↗

Single-nucleotide polymorphism discrimination using high-resolution melting analysis for the genotyping of Bacillus anthracis.Semantic proximity Read ↗

Genotyping of Bacillus cereus strains by microarray-based resequencing.Semantic proximity Read ↗

Microarray-based resequencing of multiple Bacillus anthracis isolates.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.