Article

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

2019-05-31

Abstract excerpt

<h4>Background</h4> Accurately identifying SNPs from bacterial sequencing data is an essential requirement for using genomics to track transmission and predict important phenotypes such as antimicrobial resistance. However, most previous performance evaluations of SNP calling have been restricted to eukaryotic (human) data. Additionally, bacterial SNP calling requires choosing an appropriate reference genome to a...

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Literature Corpus work: 39b2f69b-c5ec-5e87-9524-4c08c1c8f0a0
DOI: 10.1101/653774

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