Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing.

BMC genomics - 27 Jun 2013

Zhao Shanrong, Prenger Kurt, Smith Lance, Messina Thomas, Fan Hongtao, Jaeger Edward, Stephens Susan

Abstract excerpt

BACKGROUND: Technical improvements have decreased sequencing costs and, as a result, the size and number of genomic datasets have increased rapidly. Because of the lower cost, large amounts of sequence data are now being produced by small to midsize research groups. Crossbow is a software tool that can detect single nucleotide polymorphisms (SNPs) in whole-genome sequencing (WGS) data from a single subject;...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cluster Analysis
Share to Genomics
Share to Internet

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Polymorphism, Single Nucleotide

Share to Sequence Analysis

Share to Software

Share to Statistics as Topic

Source

Open in PubMed Open full text

Identifiers

PMID: 23802613
DOI: 10.1186/1471-2164-14-425
PMCID: PMC3698007

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing.PMID 23802613Read ↗

<i>Celeste</i>: A cloud-based genomics infrastructure with variant-calling pipeline suited for population-scale sequencing projectsSemantic proximity Read ↗

Genotyping in the cloud with Crossbow.Semantic proximity Read ↗

Searching for SNPs with cloud computing.Semantic proximity Read ↗

Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes.Semantic proximity Read ↗

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variantsSemantic proximity Read ↗

SeqsLab: an integrated platform for cohort-based annotation and interpretation of genetic variants on SparkSemantic proximity Read ↗

Rapid NGS Analysis on Google Cloud Platform: performance benchmark and user tutorialSemantic proximity Read ↗

GeniePool: genomic database with corresponding annotated samples based on a cloud data lake architecture.Semantic proximity Read ↗

DNAp: A Pipeline for DNA-seq Data Analysis.Semantic proximity Read ↗

VCPA: genomic variant calling pipeline and data management tool for Alzheimer’s Disease Sequencing ProjectSemantic proximity Read ↗

JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.Semantic proximity Read ↗

SEQSpark: A Complete Analysis Tool for Large-Scale Rare Variant Association Studies Using Whole-Genome and Exome Sequence Data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.