Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

DNAp: A Pipeline for DNA-seq Data Analysis.

Scientific reports - 1 May 2018

Causey Jason L, Ashby Cody, Walker Karl, Wang Zhiping Paul, Yang Mary, Guan Yuanfang, Moore Jason H, Huang Xiuzhen

Abstract excerpt

Next-generation sequencing is empowering genetic disease research. However, it also brings significant challenges for efficient and effective sequencing data analysis. We built a pipeline, called DNAp, for analyzing whole exome sequencing (WES) and whole genome sequencing (WGS) data, to detect mutations from disease samples. The pipeline is containerized, convenient to use and can run under any system, since it...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Datasets as Topic
Share to Exome Sequencing

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome

Share to High-Throughput Nucleotide Sequencing

Share to Information Dissemination

Share to Internet

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 29717215
DOI: 10.1038/s41598-018-25022-6
PMCID: PMC5931599

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

DNAp: A Pipeline for DNA-seq Data Analysis.PMID 29717215Read ↗

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variantsSemantic proximity Read ↗

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variantsSemantic proximity Read ↗

VCPA: genomic variant calling pipeline and data management tool for Alzheimer’s Disease Sequencing ProjectSemantic proximity Read ↗

Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow PipelineSemantic proximity Read ↗

WEP: a high-performance analysis pipeline for whole-exome data.Semantic proximity Read ↗

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses.Semantic proximity Read ↗

JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.Semantic proximity Read ↗

DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for next-generation sequencing dataSemantic proximity Read ↗

iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data.Semantic proximity Read ↗

A survey of tools for variant analysis of next-generation genome sequencing data.Semantic proximity Read ↗

Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human and mouse genomes: a virtual appliance approach for instant deployment.Semantic proximity Read ↗

cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing dataSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.