Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Boosting forward-time population genetic simulators through genotype compression.

BMC bioinformatics - 14 Jun 2013

Ruths Troy, Nakhleh Luay

Abstract excerpt

BACKGROUND: Forward-time population genetic simulations play a central role in deriving and testing evolutionary hypotheses. Such simulations may be data-intensive, depending on the settings to the various parameters controlling them. In particular, for certain settings, the data footprint may quickly exceed the memory of a single compute node. RESULTS: We develop a novel and general method for addressing the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genetics, Population
Share to Algorithms
Share to Computer Simulation

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Evolution, Molecular

Share to Genome

Share to Genotype

Share to Mutation

Share to Recombination, Genetic

Source

Open in PubMed Open full text

Identifiers

PMID: 23763838
DOI: 10.1186/1471-2105-14-192
PMCID: PMC3700844

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Boosting forward-time population genetic simulators through genotype compression.PMID 23763838Read ↗

Rapid forward-in-time simulation at the chromosome and genome level.Semantic proximity Read ↗

GeneEvolve: a fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data.Semantic proximity Read ↗

Efficient pedigree recording for fast population genetics simulation.Semantic proximity Read ↗

An overview of population genetic data simulation.Semantic proximity Read ↗

Geno-Diver: A combined coalescence and forward-in-time simulator for populations undergoing selection for complex traits.Semantic proximity Read ↗

Sequence-level population simulations over large genomic regions.Semantic proximity Read ↗

GBC: a parallel toolkit based on highly addressable byte-encoding blocks for extremely large-scale genotypes of species.Semantic proximity Read ↗

SFS_CODE: More Efficient and Flexible Forward SimulationsSemantic proximity Read ↗

Efficient ancestry and mutation simulation with msprime 1.0.Semantic proximity Read ↗

FFPopSim: an efficient forward simulation package for the evolution of large populations.Semantic proximity Read ↗

Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes.Semantic proximity Read ↗

Efficient genotype compression and analysis of large genetic-variation data sets.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.