GBC: a parallel toolkit based on highly addressable byte-encoding blocks for extremely large-scale genotypes of species.

Abstract excerpt

Whole -genome sequencing projects of millions of subjects contain enormous genotypes, entailing a huge memory burden and time for computation. Here, we present GBC, a toolkit for rapidly compressing large-scale genotypes into highly addressable byte-encoding blocks under an optimized parallel framework. We demonstrate that GBC is up to 1000 times faster than state-of-the-art methods to access and manage...

Topics

Share this publication in a Topic to start or enrich a Post.

• Share to Algorithms
• Share to Genomics
• Share to Genotype