Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms.

G3 (Bethesda, Md.) - 1 Mar 2013

Page Justin T, Gingle Alan R, Udall Joshua A

Abstract excerpt

Read mapping is a fundamental part of next-generation genomic research but is complicated by genome duplication in many plants. Categorizing DNA sequence reads into their respective genomes enables current methods to analyze polyploid genomes as if they were diploid. We present PolyCat-a pipeline for mapping and categorizing all types of next-generation sequence data produced from allopolyploid organisms. PolyCat...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Diploidy
Share to DNA, Plant
Share to Genome, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Gossypium

Share to Polyploidy

Share to Reproducibility of Results

Share to RNA, Plant

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 23450226
DOI: 10.1534/g3.112.005298
PMCID: PMC3583458

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms.PMID 23450226Read ↗

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.Semantic proximity Read ↗

Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes.Semantic proximity Read ↗

Methods for mapping and categorization of DNA sequence reads from allopolyploid organisms.Semantic proximity Read ↗

Transcriptome and complexity-reduced, DNA-based identification of intraspecies single-nucleotide polymorphisms in the polyploid Gossypium hirsutum L.Semantic proximity Read ↗

Graph pan-genome illuminates evolutionary trajectories and agronomic trait architecture in allotetraploid cotton.Semantic proximity Read ↗

A pangenome reference and population studies link structural variants with breeding traits in Gossypium hirsutum.Semantic proximity Read ↗

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.Semantic proximity Read ↗

CAPG: comprehensive allopolyploid genotyper.Semantic proximity Read ↗

High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement.Semantic proximity Read ↗

Transcriptome analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and allotetraploid cotton.Semantic proximity Read ↗

Allele-aware chromosome-level genome assembly of the autohexaploid Diospyros kaki Thunb.Semantic proximity Read ↗

HANDS2: accurate assignment of homoeallelic base-identity in allopolyploids despite missing data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.