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Transcriptome and complexity-reduced, DNA-based identification of intraspecies single-nucleotide polymorphisms in the polyploid Gossypium hirsutum L.

G3 (Bethesda, Md.) - 7 Aug 2014

Zhu Qian-Hao, Spriggs Andrew, Taylor Jennifer M, Llewellyn Danny, Wilson Iain

Abstract excerpt

Varietal single nucleotide polymorphisms (SNPs) are the differences within one of the two subgenomes between different tetraploid cotton varieties and have not been practically used in cotton genetics and breeding because they are difficult to identify due to low genetic diversity and very high sequence identity between homeologous genes in cotton. We have used transcriptome and restriction site-associated DNA...

Topics

Base Sequence
Chromosome Mapping
Gene Library
Genetic Linkage
Genetic Markers
Genome, Plant
Genotype
Gossypium
Phenotype
Polymorphism, Single Nucleotide
Polyploidy

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Quantitative Trait Loci

Sequence Alignment

Sequence Analysis, DNA

Transcriptome

Source

Open in PubMed Open full text

Identifiers

PMID: 25106949
DOI: 10.1534/g3.114.012542
PMCID: PMC4199696

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 31 Aug 2026.

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