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Article

CAPG: comprehensive allopolyploid genotyper.

Bioinformatics (Oxford, England) - 1 Jan 2023

Kulkarni Roshan, Zhang Yudi, Cannon Steven B, Dorman Karin S

Abstract excerpt

MOTIVATION: Genotyping by sequencing is a powerful tool for investigating genetic variation in plants, but many economically important plants are allopolyploids, where homoeologous similarity obscures the subgenomic origin of reads and confounds allelic and homoeologous SNPs. Recent polyploid genotyping methods use allelic frequencies, rate of heterozygosity, parental cross or other information to resolve read...

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PMID: 36367243
DOI: 10.1093/bioinformatics/btac729
PMCID: PMC9825759

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