Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions.

Biology direct - 8 Jun 2012

Dou Jinzhuang, Zhao Xiqiang, Fu Xiaoteng, Jiao Wenqian, Wang Nannan, Zhang Lingling, Hu Xiaoli, Wang Shi, Bao Zhenmin

Abstract excerpt

BACKGROUND: Single nucleotide polymorphisms (SNPs) are the most abundant type of genetic variation in eukaryotic genomes and have recently become the marker of choice in a wide variety of ecological and evolutionary studies. The advent of next-generation sequencing (NGS) technologies has made it...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computer Simulation
Share to Diploidy
Share to Genome, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genotyping Techniques

Share to Likelihood Functions

Share to Repetitive Sequences, Nucleic Acid

Share to Sensitivity and Specificity

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 22682067
DOI: 10.1186/1745-6150-7-17
PMCID: PMC3472322

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-22682067-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions.PMID 22682067Read ↗

Kmer2SNP: reference-free SNP calling from raw reads based on matchingSemantic proximity Read ↗

An enrichment method for mapping ambiguous reads to the reference genome for NGS analysis.Semantic proximity Read ↗

An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome.Semantic proximity Read ↗

Kmer2SNP: Reference-Free Heterozygous SNP Calling Using k-mer Frequency Distributions.Semantic proximity Read ↗

Reference-free SNP detection: dealing with the data deluge.Semantic proximity Read ↗

Reference-free detection of isolated SNPs.Semantic proximity Read ↗

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.Semantic proximity Read ↗

Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects.Semantic proximity Read ↗

Robust and efficient software for reference-free genomic diversity analysis of genotyping-by-sequencing data on diploid and polyploid species.Semantic proximity Read ↗

SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes.Semantic proximity Read ↗

Genomic sequence characteristics and the empiric accuracy of short-read sequencingSemantic proximity Read ↗

PISAD: reference-free intraspecies sample anomalies detection tool based on k-mer counting.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.