Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

PERMORY-MPI: a program for high-speed parallel permutation testing in genome-wide association studies.

Bioinformatics (Oxford, England) - 15 Apr 2012

Steiß Volker, Letschert Thomas, Schäfer Helmut, Pahl Roman

Abstract excerpt

UNLABELLED: PERMORY is software for accelerated permutation testing of genome-wide association studies (GWAS). We have parallelized PERMORY using the Message-Passing Interface resulting in a nearly linear speedup. Furthermore, we added accelerated analysis of GWAS using quantitative phenotypes, and an accurate estimation of the effective number of independent tests. AVAILABILITY AND IMPLEMENTATION: Free download...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Case-Control Studies
Share to Genome-Wide Association Study

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Polymorphism, Single Nucleotide

Share to Software

Source

Identifiers

PMID: 22345620
DOI: 10.1093/bioinformatics/bts086

Genes

MPI

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

PERMORY-MPI: a program for high-speed parallel permutation testing in genome-wide association studies.PMID 22345620Read ↗

PERMORY: an LD-exploiting permutation test algorithm for powerful genome-wide association testing.Semantic proximity Read ↗

GWA-X: An Extensible GPU Accelerated Package for Permutation Testing in Genome-Wide Association StudiesSemantic proximity Read ↗

ParallABEL: an R library for generalized parallelization of genome-wide association studies.Semantic proximity Read ↗

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters.Semantic proximity Read ↗

Performing highly parallelized and reproducible GWAS analysis on biobank-scale dataSemantic proximity Read ↗

PascalX: a Python library for GWAS gene and pathway enrichment tests.Semantic proximity Read ↗

Integrated genome-wide pathway association analysis with INTERSNP.Semantic proximity Read ↗

FastEpistasis: a high performance computing solution for quantitative trait epistasis.Semantic proximity Read ↗

A high-performance computing toolset for relatedness and principal component analysis of SNP data.Semantic proximity Read ↗

SAIGE-GPU: accelerating genome- and phenome-wide association studies using GPUs.Semantic proximity Read ↗

GWAS on your notebook: fast semi-parallel linear and logistic regression for genome-wide association studies.Semantic proximity Read ↗

PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.