Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters.

Bioinformatics (Oxford, England) - 1 Jan 2013

Huang Hailiang, Tata Sandeep, Prill Robert J

Abstract excerpt

SUMMARY: Computational workloads for genome-wide association studies (GWAS) are growing in scale and complexity outpacing the capabilities of single-threaded software designed for personal computers. The BlueSNP R package implements GWAS statistical tests in the R programming language and executes the calculations across computer clusters configured with Apache Hadoop, a de facto standard framework for...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genome-Wide Association Study
Share to Phenotype
Share to Quantitative Trait Loci

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Software

Source

Identifiers

PMID: 23202745
DOI: 10.1093/bioinformatics/bts647

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters.PMID 23202745Read ↗

BIGwas: Single-command quality control and association testing for multi-cohort and biobank-scale GWAS/PheWAS data.Semantic proximity Read ↗

Genome-wide association studies pipeline (GWASpi): a desktop application for genome-wide SNP analysis and management.Semantic proximity Read ↗

Performing highly parallelized and reproducible GWAS analysis on biobank-scale dataSemantic proximity Read ↗

H3AGWAS: a portable workflow for genome wide association studies.Semantic proximity Read ↗

The MRC IEU OpenGWAS data infrastructureSemantic proximity Read ↗

snpGeneSets: An R Package for Genome-Wide Study Annotation.Semantic proximity Read ↗

GWA-X: An Extensible GPU Accelerated Package for Permutation Testing in Genome-Wide Association StudiesSemantic proximity Read ↗

DiGeST: Distributed Computing for Scalable Gene and Variant Ranking with Hadoop/SparkSemantic proximity Read ↗

A high-performance computing toolset for relatedness and principal component analysis of SNP data.Semantic proximity Read ↗

PERMORY-MPI: a program for high-speed parallel permutation testing in genome-wide association studies.Semantic proximity Read ↗

GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies.Semantic proximity Read ↗

PascalX: a Python library for GWAS gene and pathway enrichment tests.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.