Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

The effect of reference panels and software tools on genotype imputation.

AMIA ... Annual Symposium proceedings. AMIA Symposium - 1 Jan 2011

Nho Kwangsik, Shen Li, Kim Sungeun, Swaminathan Shanker, Risacher Shannon L, Saykin Andrew J

Abstract excerpt

Genotype imputation is increasingly employed in genome-wide association studies, particularly for integrative and cross-platform analysis. Several imputation algorithms use reference panels with a larger set of genotyped markers to infer genotypes at ungenotyped marker locations. Our objective was to assess which method and reference panel was more accurate when carrying out imputation. We investigated the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Aged
Share to Aged, 80 and over
Share to Algorithms

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Alzheimer Disease

Share to Genome-Wide Association Study

Share to HapMap Project

Share to Longitudinal Studies

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 22195161
PMCID: PMC3243280

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

The effect of reference panels and software tools on genotype imputation.PMID 22195161Read ↗

On combining reference data to improve imputation accuracy.Semantic proximity Read ↗

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.Semantic proximity Read ↗

Meta-imputation: An efficient method to combine genotype data after imputation with multiple reference panels.Semantic proximity Read ↗

Genotype Imputation from Large Reference Panels.Semantic proximity Read ↗

Analyses and comparison of accuracy of different genotype imputation methods.Semantic proximity Read ↗

Genotype-imputation accuracy across worldwide human populations.Semantic proximity Read ↗

Genotype Imputation with Millions of Reference Samples.Semantic proximity Read ↗

Effect of genome-wide genotyping and reference panels on rare variants imputation.Semantic proximity Read ↗

Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel.Semantic proximity Read ↗

A diverse ancestrally-matched reference panel increases genotype imputation accuracy in a underrepresented population.Semantic proximity Read ↗

Genotype imputation in genome-wide association studies.Semantic proximity Read ↗

Imputation of missing genotypes: an empirical evaluation of IMPUTE.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.