Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database.

Molecular & cellular proteomics : MCP - 1 Jan 2011

de Souza Gustavo A, Arntzen Magnus Ø, Fortuin Suereta, Schürch Anita C, Målen Hiwa, McEvoy Christopher R E, van Soolingen Dick, Thiede Bernd, Warren Robin M, Wiker Harald G

Abstract excerpt

Precise annotation of genes or open reading frames is still a difficult task that results in divergence even for data generated from the same genomic sequence. This has an impact in further proteomic studies, and also compromises the characterization of clinical isolates with many specific genetic variations that may not be represented in the selected database. We recently developed software called multistrain...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Databases, Protein
Share to Mass Spectrometry

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Molecular Sequence Annotation

Share to Mycobacterium tuberculosis

Share to Open Reading Frames

Share to Prokaryotic Cells

Share to Protein Biosynthesis

Share to Proteomics

Source

Open in PubMed Open full text

Identifiers

PMID: 21030493
DOI: 10.1074/mcp.M110.002527
PMCID: PMC3013451

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database.PMID 21030493Read ↗

On the impact of the pangenome and annotation discrepancies while building protein sequence databases for bacteria proteogenomicsSemantic proximity Read ↗

Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates.Semantic proximity Read ↗

MGDD: Mycobacterium tuberculosis genome divergence database.Semantic proximity Read ↗

Proteogenomic Analysis of Mycobacterium tuberculosis By High Resolution Mass Spectrometry*Semantic proximity Read ↗

Large scale analysis of amino acid substitutions in bacterial proteomics.Semantic proximity Read ↗

Rapid identification and classification of Mycobacterium spp. using whole-cell protein barcodes with matrix assisted laser desorption ionization time of flight mass spectrometry in comparison with multigene phylogenetic analysis.Semantic proximity Read ↗

Stringent proteogenomic discovery of novel small proteins in <i>Mycobacterium tuberculosis</i> clinical reference strainsSemantic proximity Read ↗

Single nucleotide polymorphisms in Mycobacterium tuberculosis and the need for a curated database.Semantic proximity Read ↗

Rise of Clinical Microbial Proteogenomics: A Multiomics Approach to Nontuberculous Mycobacterium-The Case of Mycobacterium abscessus UC22.Semantic proximity Read ↗

IDBac: an open-access web platform to identify bacteria and analyze relationships in culture collections using MALDI-TOF mass spectrometrySemantic proximity Read ↗

Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations.Semantic proximity Read ↗

Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.