Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

Genome biology - 1 Jan 2009

Popova Tatiana, Manié Elodie, Stoppa-Lyonnet Dominique, Rigaill Guillem, Barillot Emmanuel, Stern Marc Henri

Abstract excerpt

We describe a method for automatic detection of absolute segmental copy numbers and genotype status in complex cancer genome profiles measured with single-nucleotide polymorphism (SNP) arrays. The method is based on pattern recognition of segmented and smoothed copy number and allelic imbalance p...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Allelic Imbalance
Share to Automation
Share to Gene Expression Regulation, Neoplastic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome

Share to Homozygote

Share to Karyotyping

Share to Loss of Heterozygosity

Share to Ploidies

Source

Open in PubMed Open full text

Identifiers

PMID: 19903341
DOI: 10.1186/gb-2009-10-11-r128
PMCID: PMC2810663

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 2 Sept 2026. Prepared record publication-19903341-2026-09-02.2. Manifest publication-graph-cohort-2026-09-02.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 2 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.PMID 19903341Read ↗

Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity.Semantic proximity Read ↗

High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping.Semantic proximity Read ↗

Analyzing cancer samples with SNP arrays.Semantic proximity Read ↗

CNAReporter: a GenePattern pipeline for the generation of clinical reports of genomic alterations.Semantic proximity Read ↗

Genome-wide identification of somatic aberrations from paired normal-tumor samples.Semantic proximity Read ↗

PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data.Semantic proximity Read ↗

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing dataSemantic proximity Read ↗

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.Semantic proximity Read ↗

Single nucleotide polymorphism microarray analysis of genetic alterations in cancer.Semantic proximity Read ↗

Identification of structural aberrations in cancer by SNP array analysis.Semantic proximity Read ↗

Allelic dosage analysis with genotyping microarrays.Semantic proximity Read ↗

Genome-wide allelic state analysis on flow-sorted tumor fractions provides an accurate measure of chromosomal aberrations.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.