Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genotyping and annotation of Affymetrix SNP arrays.

Nucleic acids research - 1 Jan 2006

Lamy Philippe, Andersen Claus L, Wikman Friedrik P, Wiuf Carsten

Abstract excerpt

In this paper we develop a new method for genotyping Affymetrix single nucleotide polymorphism (SNP) array. The method is based on (i) using multiple arrays at the same time to determine the genotypes and (ii) a model that relates intensities of individual SNPs to each other. The latter point allows us to annotate SNPs that have poor performance, either because of poor experimental conditions or because for one...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Alleles
Share to Chromosomes, Human, X

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genotype

Share to Oligonucleotide Array Sequence Analysis

Share to Polymorphism, Single Nucleotide

Share to Reproducibility of Results

Source

Open in PubMed Open full text

Identifiers

PMID: 16899450
DOI: 10.1093/nar/gkl475
PMCID: PMC1557804

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genotyping and annotation of Affymetrix SNP arrays.PMID 16899450Read ↗

A genotype calling algorithm for affymetrix SNP arrays.Semantic proximity Read ↗

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays.Semantic proximity Read ↗

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.Semantic proximity Read ↗

Comprehensive survey of SNPs in the Affymetrix exon array using the 1000 Genomes dataset.Semantic proximity Read ↗

Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.Semantic proximity Read ↗

Genotype calling for the Affymetrix platform.Semantic proximity Read ↗

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.Semantic proximity Read ↗

A genotype calling algorithm for the Illumina BeadArray platform.Semantic proximity Read ↗

Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.Semantic proximity Read ↗

A new genotype calling method for affymetrix SNP arrays.Semantic proximity Read ↗

Automated SNP genotype clustering algorithm to improve data completeness in high-throughput SNP genotyping datasets from custom arrays.Semantic proximity Read ↗

AccuTyping: new algorithms for automated analysis of data from high-throughput genotyping with oligonucleotide microarrays.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.