Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information.

BMC bioinformatics - 7 Dec 2004

Chen Yian A, McKillen David J, Wu Shuyuan, Jenny Matthew J, Chapman Robert, Gross Paul S, Warr Gregory W, Almeida Jonas S

Abstract excerpt

BACKGROUND: Expression microarrays are increasingly used to characterize environmental responses and host-parasite interactions for many different organisms. Probe selection for cDNA microarrays using expressed sequence tags (ESTs) is challenging due to high sequence redundancy and potential cross-hybridization between paralogous genes. In organisms with limited genomic information, like marine organisms, this...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cluster Analysis
Share to Computational Biology

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA, Complementary

Share to Expressed Sequence Tags

Share to Genome

Share to Microarray Analysis

Share to Penaeidae

Share to Research Design

Source

Open in PubMed Open full text

Identifiers

PMID: 15585062
DOI: 10.1186/1471-2105-5-191
PMCID: PMC539232

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information.PMID 15585062Read ↗

An information theoretic method of microarray probe design for genome classification.Semantic proximity Read ↗

Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.Semantic proximity Read ↗

Mining ESTs to determine the usefulness of SNPs across shrimp species.Semantic proximity Read ↗

EST clustering error evaluation and correction.Semantic proximity Read ↗

Design of long oligonucleotide probes for functional gene detection in a microbial community.Semantic proximity Read ↗

Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers.Semantic proximity Read ↗

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.Semantic proximity Read ↗

Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish.Semantic proximity Read ↗

Strategies for undertaking expressed sequence tag (EST) projects.Semantic proximity Read ↗

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae.Semantic proximity Read ↗

Increasing genomic information in bivalves through new EST collections in four species: development of new genetic markers for environmental studies and genome evolution.Semantic proximity Read ↗

Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.