Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.

BMC genomics - 30 Apr 2010

Lee Bo-Young, Howe Aimee E, Conte Matthew A, D'Cotta Helena, Pepey Elodie, Baroiller Jean-Francois, di Palma Federica, Carleton Karen L, Kocher Thomas D

Abstract excerpt

BACKGROUND: Large collections of expressed sequence tags (ESTs) are a fundamental resource for analysis of gene expression and annotation of genome sequences. We generated 116,899 ESTs from 17 normalized and two non-normalized cDNA libraries representing 16 tissues from tilapia, a cichlid fish widely used in aquaculture and biological research. RESULTS: The ESTs were assembled into 20,190 contigs and 36,028...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to DNA, Complementary
Share to Expressed Sequence Tags

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genomic Library

Share to Microsatellite Repeats

Share to Polymorphism, Single Nucleotide

Share to Tilapia

Source

Open in PubMed Open full text

Identifiers

PMID: 20433739
DOI: 10.1186/1471-2164-11-278
PMCID: PMC2874815

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.PMID 20433739Read ↗

Fugu ESTs: new resources for transcription analysis and genome annotation.Semantic proximity Read ↗

Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.Semantic proximity Read ↗

Generation and analysis of ESTs from the grass carp, Ctenopharyngodon idellus.Semantic proximity Read ↗

Identification of Genes Related to Cold Tolerance and Novel Genetic Markers for Molecular Breeding in Taiwan Tilapia (Oreochromis spp.) via Transcriptome AnalysisSemantic proximity Read ↗

Optimizing de novo transcriptome assembly and extending genomic resources for striped catfish (Pangasianodon hypophthalmus).Semantic proximity Read ↗

RNA-Seq technology and its application in fish transcriptomics.Semantic proximity Read ↗

Identification and initial characterization of 5000 expressed sequenced tags (ESTs) each from adult human normal and osteoarthritic cartilage cDNA librariesSemantic proximity Read ↗

Transcriptome analysis of the grass carp (Ctenopharyngodon idella) using 454 pyrosequencing methodology for gene and marker discovery.Semantic proximity Read ↗

Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum).Semantic proximity Read ↗

Generation and analysis of 10 000 ESTs from the half-smooth tongue sole Cynoglossus semilaevis and identification of microsatellite and SNP markers.Semantic proximity Read ↗

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies.Semantic proximity Read ↗

Development of EST derived SSRs and SNPs as a genomic resource in Indian catfish, Clarias batrachus.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.