Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

A new algorithm for analysis of within-host HIV-1 evolution.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing - 1 Jan 2001

Ren F, Ogishima S, Tanaka H

Abstract excerpt

A new algorithm for inferring the evolution of within-host viral sequences is presented. A sequential-linking approach is developed so that a longitudinal phylogenetic tree can be reconstructed from sequential molecular data that are obtained at different time points from the same host. The algorithm employs a codon-based model, which uses a Markov process to describe substitutions between codons, to calculate...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Codon
Share to Databases, Factual
Share to Genes, env

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to HIV Envelope Protein gp120

Share to HIV Infections

Share to Markov Chains

Share to Peptide Fragments

Source

Identifiers

PMID: 11262976
DOI: 10.1142/9789814447362_0057

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

A new algorithm for analysis of within-host HIV-1 evolution.PMID 11262976Read ↗

Bayesian Phylogenetic Inference of HIV Latent Lineage Ages Using Serial SequencesSemantic proximity Read ↗

Reconstructing the dynamics of HIV evolution within hosts from serial deep sequence data.Semantic proximity Read ↗

Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains.Semantic proximity Read ↗

Modeling sequence evolution in acute HIV-1 infection.Semantic proximity Read ↗

Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression.Semantic proximity Read ↗

The intra-host evolutionary and population dynamics of human immunodeficiency virus type 1: a phylogenetic perspectiveSemantic proximity Read ↗

Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts.Semantic proximity Read ↗

A mutagenetic tree hidden Markov model for longitudinal clonal HIV sequence dataSemantic proximity Read ↗

A framework including recombination for analyzing the dynamics of within-host HIV genetic diversity.Semantic proximity Read ↗

A regression modeling approach for describing patterns of HIV genetic variation.Semantic proximity Read ↗

The molecular clock of HIV-1 unveiled through analysis of a known transmission history.Semantic proximity Read ↗

Host-specific driving force in human immunodeficiency virus type 1 evolution in vivoSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.